| Protein ZmMYB88 | |
|---|---|
|
ZmMYB88 is a protein in the MYB family.
|
|
| Information | |
| TF Name: | ZmMYB88 |
| Species: | Maize |
| TF Family: | MYB |
| Gene Name(Synonym): | MYB88 |
| Uniprot ID: | K7TQE6 |
| Subgenome: | 1 |
Protein ZmMYB88
ZmMYB88 is a protein in the MYB family.
| Overview of domains present in v5 transcripts | ||
|---|---|---|
| PF00249 | PF13921 | |
| Zm00001eb164740_T001 |  | |
| Zm00001eb164740_T002 | | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d048623 | DAPseq |  |
sequence | fimo | position |
| Zm00001d048623 | DAPseq |  |
sequence | fimo | position |
| Zm00001d048623 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d048623 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmMYB88 is the regulator
Expand
Interactions where ZmMYB88 is the target
Expand
Zm00001eb164740_T001 from maize genome v5
Amino Acid Sequence
Copy to clipboard
MVTVREEMRKGPWTEQEDIQLVCTVRLFGDHRWDFIAQVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPQEERIIIELHAR
WGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKMGMPSPSSSSSSLTYQTCLLDTIPVIGMGSGDTHNGSCVTSTLE
NTQSVMDGYPMDQIWKEIEAPHAPNLLSIAEGKEKTCSSSPCHLPSPVMWDYKCPEIFWKMGDQEIMM
MVTVREEMRKGPWTEQEDIQLVCTVRLFGDHRWDFIAQVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPQEERIIIELHAR
WGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKMGMPSPSSSSSSLTYQTCLLDTIPVIGMGSGDTHNGSCVTSTLE
NTQSVMDGYPMDQIWKEIEAPHAPNLLSIAEGKEKTCSSSPCHLPSPVMWDYKCPEIFWKMGDQEIMM
MVTVREEMRKGPWTEQEDIQLVCTVRLFGDHRWDFIAQVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPQEERIIIELHAR
WGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKMGMPSPSSSSSSLTYQTCLLDTIPVIGMGSGDTHNGSCVTSTLE
NTQSVMDGYPMDQIWKEIEAPHAPNLLSIAEGKEKTCSSSPCHLPSPVMWDYKCPEIFWKMGDQEIMM
MVTVREEMRKGPWTEQEDIQLVCTVRLFGDHRWDFIAQVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPQEERIIIELHAR
WGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKMGMPSPSSSSSSLTYQTCLLDTIPVIGMGSGDTHNGSCVTSTLE
NTQSVMDGYPMDQIWKEIEAPHAPNLLSIAEGKEKTCSSSPCHLPSPVMWDYKCPEIFWKMGDQEIMM
MVTVREEMRKGPWTEQEDIQLVCTVRLFGDHRWDFIAQVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPQEERIIIELHAR
WGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKMGMPSPSSSSSSLTYQTCLLDTIPVIGMGSGDTHNGSCVTSTLE
NTQSVMDGYPMDQIWKEIEAPHAPNLLSIAEGKEKTCSSSPCHLPSPVMWDYKCPEIFWKMGDQEIMM
MVTVREEMRKGPWTEQEDIQLVCTVRLFGDHRWDFIAQVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPQEERIIIELHAR
WGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKMGMPSPSSSSSSLTYQTCLLDTIPVIGMGSGDTHNGSCVTSTLE
NTQSVMDGYPMDQIWKEIEAPHAPNLLSIAEGKEKTCSSSPCHLPSPVMWDYKCPEIFWKMGDQEIMM
MVTVREEMRKGPWTEQEDIQLVCTVRLFGDHRWDFIAQVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPQEERIIIELHAR
WGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKMGMPSPSSSSSSLTYQTCLLDTIPVIGMGSGDTHNGSCVTSTLE
NTQSVMDGYPMDQIWKEIEAPHAPNLLSIAEGKEKTCSSSPCHLPSPVMWDYKCPEIFWKMGDQEIMM
MVTVREEMRKGPWTEQEDIQLVCTVRLFGDHRWDFIAQVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPQEERIIIELHAR
WGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKMGMPSPSSSSSSLTYQTCLLDTIPVIGMGSGDTHNGSCVTSTLE
NTQSVMDGYPMDQIWKEIEAPHAPNLLSIAEGKEKTCSSSPCHLPSPVMWDYKCPEIFWKMGDQEIMM
MVTVREEMRKGPWTEQEDIQLVCTVRLFGDHRWDFIAQVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPQEERIIIELHAR
WGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKMGMPSPSSSSSSLTYQTCLLDTIPVIGMGSGDTHNGSCVTSTLE
NTQSVMDGYPMDQIWKEIEAPHAPNLLSIAEGKEKTCSSSPCHLPSPVMWDYKCPEIFWKMGDQEIMM
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF00249 |
|
| PF13921 |
|
| PF00249 |
|
| PF13921 |
|
| PF00249 |
|
| Hover here to show all domains | |
Nucleotide Sequence
Copy to clipboard
Expand
ACAAAGCATAAGACATAGTGGCTTC...
ACAAAGCATAAGACATAGTGGCTTCTTCTCCCTATAGCTACCTTCTTCCTATCAGGCTGGAGTTCATCAAGGATTTGAACCTGGAACTGGAGCCCACAAGCACACAGAGGAGGAAGAACACCAAGACTGGTTCCCAACCTATCCAAGGTAGAAGCGAGCAACGTTAGTGTGGTAGTAACATGGTGACTGTGAGAGAGGAGATGCGTAAGGGGCCATGGACAGAGCAGGAGGACATTCAGCTGGTATGCACTGTCCGCCTGTTTGGTGACCATCGTTGGGACTTCATTGCTCAAGTCTCAGGCCTCAACAGGACAGGAAAGAGCTGCCGCCTGCGCTGGGTGAACTATCTTCACCCTGGCCTCAAGCATGGCCGCATGTCACCACAAGAAGAGCGCATTATCATTGAGCTCCATGCTCGGTGGGGGAACAGGTGGTCTAGGATAGCAAGGAGGCTGCCAGGGCGCACAGACAATGAGATCAAGAACTACTGGAGAACACACATGAGAAAGAAGGCACAGGAGAGGAAGATGGGCATGCCATCACCTTCATCCTCATCCTCCTCACTGACATACCAAACCTGCCTTCTTGACACCATTCCAGTCATTGGGATGGGCAGTGGTGACACTCACAATGGTAGCTGTGTCACCAGCACCCTCGAGAACACACAGAGTGTCATGGATGGATATCCCATGGATCAGATATGGAAGGAGATTGAGGCACCACATGCACCTAACTTGCTGAGTATTGCTGAAGGGAAAGAGAAGACGTGCAGCAGTAGCCCCTGTCATCTACCATCACCTGTAATGTGGGACTACAAATGCCCTGAGATATTCTGGAAGATGGGAGATCAAGAAATCATGATGTGATGGAAAATGAAATCAAGATGTTGGCTGCACGATTTGGTTATGGGCTTATGGTAAATAAGGCCATCGCTATTGAAGGCTGAAGGAATACATCTATATTGGTCAGGCCACTCAGCTATCTGCCTAGCAGATTTGCAGTATTTGTACTTCCTAACTATGCTTGCATTAGTATGCAGTATTTTTAAATCTAGTGTAACACTGGTGGTATGCTCATAATGTATGTATCTATGTAGTTTGAAAAATAGTTTGTATCAGTTTGTGCAATAGTGTGGACGCTCTATATGCATGATATATCTAT
GRMZM2G048136_T01 from maize genome v3
Amino Acid Sequence
Copy to clipboard
MSPQEERIIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKMGMPSPSSSSSSLTYQTCLLDTIPVIGMG
SGDTHNGSCVTSTLENTQSVMDGYPMDQIWKEIEAPHAPNLLSIAEGKEKTCSSSPCHLPSPVMWDYKCPEIFWKMGDQE
IMM
Nucleotide Sequence
Copy to clipboard
Expand
ATGGTGACTGTGAGAGAGGAGATGC...
ATGGTGACTGTGAGAGAGGAGATGCGTAAGGGGCCATGGACAGAGCAGGAGGACATTCAGCTGGTATGCACTGTCCGCCTGTTTGGTGACCATCGTTGGGACTTCATTGCTCAAGTCTCAGGTTTGAGGGGTTGGAGAACTACAACTTAGGTAGCTATTTTGCTATCCTTAGCGCAAAGTCGCAAACACGAATGTCTTCCTGTCTAACCAGCCTTCTTCATACTATACATTCTCTATGTTCATGCAGGCCTCAACAGGACAGGAAAGAGCTGCCGCCTGCGCTGGGTGAACTATCTTCACCCTGGCCTCAAGCATGGCCGCATGTCACCACAAGAAGAGCGCATTATCATTGAGCTCCATGCTCGGTGGGGGAACAGGTGGTCTAGGATAGCAAGGAGGCTGCCAGGGCGCACAGACAATGAGATCAAGAACTACTGGAGAACACACATGAGAAAGAAGGCACAGGAGAGGAAGATGGGCATGCCATCACCTTCATCCTCATCCTCCTCACTGACATACCAAACCTGCCTTCTTGACACCATTCCAGTCATTGGGATGGGCAGTGGTGACACTCACAATGGTAGCTGTGTCACCAGCACCCTCGAGAACACACAGAGTGTCATGGATGGATATCCCATGGATCAGATATGGAAGGAGATTGAGGCACCACATGCACCTAACTTGCTGAGTATTGCTGAAGGGAAAGAGAAGACGTGCAGCAGTAGCCCCTGTCATCTACCATCACCTGTAATGTGGGACTACAAATGCCCTGAGATATTCTGGAAGATGGGAGATCAAGAAATCATGATGTGATGGAAAATGAAATCAAGATGTTGGCTGCACGATTTGGTTATGGGCTTATGGTAAATAAGGCCATCGCTATTGAAGGCTGAAGGAATACATCTATATTGGTCAGGCCACTCAGCTATCTGCCTAGCAGATTTGCAGTATTTGTACTTCCTAACTATGCTTGCATTAGTATGCAGTATTTTTAAATCTAGTGTAACACTGGTGGTATGCTCATAATGTATGTATCTATGTAGTTTGAAAAATAGTTTGTATCAGTTTGTGCAATAGTGTGGACGCTCTATATGCATGATATA
GRMZM2G048136_T02 from maize genome v3
Amino Acid Sequence
Copy to clipboard
MVTVREEMRKGPWTEQEDIQLVCTVRLFGDHRWDFIAQVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPQEERIIIELHAR
WGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKMGMPSPSSSSSSLTYQTCLLDTIPVIGMGSGDTHNGSCVTSTLE
NTQSVMDGYPMDQIWKEIEAPHAPNLLSIAEGKEKTCSSSPCHLPSPVMWDYKCPEIFWKMGDQEIMM
Nucleotide Sequence
Copy to clipboard
Expand
ATGGTGACTGTGAGAGAGGAGATGC...
ATGGTGACTGTGAGAGAGGAGATGCGTAAGGGGCCATGGACAGAGCAGGAGGACATTCAGCTGGTATGCACTGTCCGCCTGTTTGGTGACCATCGTTGGGACTTCATTGCTCAAGTCTCAGGCCTCAACAGGACAGGAAAGAGCTGCCGCCTGCGCTGGGTGAACTATCTTCACCCTGGCCTCAAGCATGGCCGCATGTCACCACAAGAAGAGCGCATTATCATTGAGCTCCATGCTCGGTGGGGGAACAGGTGGTCTAGGATAGCAAGGAGGCTGCCAGGGCGCACAGACAATGAGATCAAGAACTACTGGAGAACACACATGAGAAAGAAGGCACAGGAGAGGAAGATGGGCATGCCATCACCTTCATCCTCATCCTCCTCACTGACATACCAAACCTGCCTTCTTGACACCATTCCAGTCATTGGGATGGGCAGTGGTGACACTCACAATGGTAGCTGTGTCACCAGCACCCTCGAGAACACACAGAGTGTCATGGATGGATATCCCATGGATCAGATATGGAAGGAGATTGAGGCACCACATGCACCTAACTTGCTGAGTATTGCTGAAGGGAAAGAGAAGACGTGCAGCAGTAGCCCCTGTCATCTACCATCACCTGTAATGTGGGACTACAAATGCCCTGAGATATTCTGGAAGATGGGAGATCAAGAAATCATGATGTGATGGAAAATGAAATCAAGATGTTGGCTGCACGATTTGGTTATGGGCTTATGGTAAATAAGGCCATCGCTATTGAAGGCTGAAGGAATACATCTATATTGGTCAGGCCACTCAGCTATCTGCCTAGCAGATTTGCAGTATTTGTACTTCCTAACTATGCTTGCATTAGTATGCAGTATTTTTAAATCTAGTGTAACACTGGTGGTATGCTCATAATGTATGTATCTATGTAGTTTGAAAAATAGTTTGTATCAGTTTGTGCAATAGTGTGGACGCTCTATATGCATGATATA
Zm00001d048623_T001 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MSPQEERIIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKMGMPSPSSSSSSLTYQTCLLDTIPVIGMG
SGDTHNGSCVTSTLENTQSVMDGYPMDQIWKEIEAPHAPNLLSIAEGKEKTCSSSPCHLPSPVMWDYKCPEIFWKMGDQE
IMM
Nucleotide Sequence
Copy to clipboard
Expand
ACAAAGCATAAGACATAGTGGCTTC...
ACAAAGCATAAGACATAGTGGCTTCTTCTCCCTATAGCTACCTTCTTCCTATCAGGCTGGAGTTCATCAAGGATTTGAACCTGGAACTGGAGCCCACAAGCACACAGAGGAGGAAGAACACCAAGACTGGTTCCCAACCTATCCAAGGTAGAAGCGAGCAACGTTAGTGTGGTAGTAACATGGTGACTGTGAGAGAGGAGATGCGTAAGGGGCCATGGACAGAGCAGGAGGACATTCAGCTGGTATGCACTGTCCGCCTGTTTGGTGACCATCGTTGGGACTTCATTGCTCAAGTCTCAGGTTTGAGGGGTTGGAGAACTACAACTTAGGCCTCAACAGGACAGGAAAGAGCTGCCGCCTGCGCTGGGTGAACTATCTTCACCCTGGCCTCAAGCATGGCCGCATGTCACCACAAGAAGAGCGCATTATCATTGAGCTCCATGCTCGGTGGGGGAACAGGTGGTCTAGGATAGCAAGGAGGCTGCCAGGGCGCACAGACAATGAGATCAAGAACTACTGGAGAACACACATGAGAAAGAAGGCACAGGAGAGGAAGATGGGCATGCCATCACCTTCATCCTCATCCTCCTCACTGACATACCAAACCTGCCTTCTTGACACCATTCCAGTCATTGGGATGGGCAGTGGTGACACTCACAATGGTAGCTGTGTCACCAGCACCCTCGAGAACACACAGAGTGTCATGGATGGATATCCCATGGATCAGATATGGAAGGAGATTGAGGCACCACATGCACCTAACTTGCTGAGTATTGCTGAAGGGAAAGAGAAGACGTGCAGCAGTAGCCCCTGTCATCTACCATCACCTGTAATGTGGGACTACAAATGCCCTGAGATATTCTGGAAGATGGGAGATCAAGAAATCATGATGTGATGGAAAATGAAATCAAGATGTTGGCTGCACGATTTGGTTATGGGCTTATGGTAAATAAGGCCATCGCTATTGAAGGCTGAAGGAATACATCTATATTGGTCAGGCCACTCAGCTATCTGCCTAGCAGATTTGCAGTATTTGTACTTCCTAACTATGCTTGCATTAGTATGCAGTATTTTTAAATCTAGTGTAACACTGGTGGTATGCTCATAATGTATGTATCTATGTAGTTT
Zm00001d048623_T002 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MVTVREEMRKGPWTEQEDIQLVCTVRLFGDHRWDFIAQVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPQEERIIIELHAR
WGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKMGMPSPSSSSSSLTYQTCLLDTIPVIGMGSGDTHNGSCVTSTLE
NTQSVMDGYPMDQIWKEIEAPHAPNLLSIAEGKEKTCSSSPCHLPSPVMWDYKCPEIFWKMGDQEIMM
Nucleotide Sequence
Copy to clipboard
Expand
AAAGCATAAGACATAGTGGCTTCTT...
AAAGCATAAGACATAGTGGCTTCTTCTCCCTATAGCTACCTTCTTCCTATCAGGCTGGAGTTCATCAAGGATTTGAACCTGGAACTGGAGCCCACAAGCACACAGAGGAGGAAGAACACCAAGACTGGTTCCCAACCTATCCAAGGTAGAAGCGAGCAACGTTAGTGTGGTAGTAACATGGTGACTGTGAGAGAGGAGATGCGTAAGGGGCCATGGACAGAGCAGGAGGACATTCAGCTGGTATGCACTGTCCGCCTGTTTGGTGACCATCGTTGGGACTTCATTGCTCAAGTCTCAGGCCTCAACAGGACAGGAAAGAGCTGCCGCCTGCGCTGGGTGAACTATCTTCACCCTGGCCTCAAGCATGGCCGCATGTCACCACAAGAAGAGCGCATTATCATTGAGCTCCATGCTCGGTGGGGGAACAGGTGGTCTAGGATAGCAAGGAGGCTGCCAGGGCGCACAGACAATGAGATCAAGAACTACTGGAGAACACACATGAGAAAGAAGGCACAGGAGAGGAAGATGGGCATGCCATCACCTTCATCCTCATCCTCCTCACTGACATACCAAACCTGCCTTCTTGACACCATTCCAGTCATTGGGATGGGCAGTGGTGACACTCACAATGGTAGCTGTGTCACCAGCACCCTCGAGAACACACAGAGTGTCATGGATGGATATCCCATGGATCAGATATGGAAGGAGATTGAGGCACCACATGCACCTAACTTGCTGAGTATTGCTGAAGGGAAAGAGAAGACGTGCAGCAGTAGCCCCTGTCATCTACCATCACCTGTAATGTGGGACTACAAATGCCCTGAGATATTCTGGAAGATGGGAGATCAAGAAATCATGATGTGATGGAAAATGAAATCAAGATGTTGGCTGCACGATTTGGTTATGGGCTTATGGTAAATAAGGCCATCGCTATTGAAGGCTGAAGGAATACATCTATATTGGTCAGGCCACTCAGCTATCTGCCTAGCAGATTTGCAGTATTTGTACTTCCTAACTATGCTTGCATTAGTATGCAGTATTTTTAAATCTAGTGTAACACTGGTGGTATGCTCATAATGTATGTATCTATGTAGTTTGAAAAATAGTTTGTATCAGTTTGTGCAATAGTGTGGACGCTCTATATGCATGATATA
Zm00001eb164740_T002 from maize genome v5
Amino Acid Sequence
Copy to clipboard
MSPQEERIIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKMGMPSPSSSSSSLTYQTCLLDTIPVIGMG
SGDTHNGSCVTSTLENTQSVMDGYPMDQIWKEIEAPHAPNLLSIAEGKEKTCSSSPCHLPSPVMWDYKCPEIFWKMGDQE
IMM
Nucleotide Sequence
Copy to clipboard
Expand
AAAGCATAAGACATAGTGGCTTCTT...
AAAGCATAAGACATAGTGGCTTCTTCTCCCTATAGCTACCTTCTTCCTATCAGGCTGGAGTTCATCAAGGATTTGAACCTGGAACTGGAGCCCACAAGCACACAGAGGAGGAAGAACACCAAGACTGGTTCCCAACCTATCCAAGGTAGAAGCGAGCAACGTTAGTGTGGTAGTAACATGGTGACTGTGAGAGAGGAGATGCGTAAGGGGCCATGGACAGAGCAGGAGGACATTCAGCTGGTATGCACTGTCCGCCTGTTTGGTGACCATCGTTGGGACTTCATTGCTCAAGTCTCAGGTTTGAGGGGTTGGAGAACTACAACTTAGGCCTCAACAGGACAGGAAAGAGCTGCCGCCTGCGCTGGGTGAACTATCTTCACCCTGGCCTCAAGCATGGCCGCATGTCACCACAAGAAGAGCGCATTATCATTGAGCTCCATGCTCGGTGGGGGAACAGGTGGTCTAGGATAGCAAGGAGGCTGCCAGGGCGCACAGACAATGAGATCAAGAACTACTGGAGAACACACATGAGAAAGAAGGCACAGGAGAGGAAGATGGGCATGCCATCACCTTCATCCTCATCCTCCTCACTGACATACCAAACCTGCCTTCTTGACACCATTCCAGTCATTGGGATGGGCAGTGGTGACACTCACAATGGTAGCTGTGTCACCAGCACCCTCGAGAACACACAGAGTGTCATGGATGGATATCCCATGGATCAGATATGGAAGGAGATTGAGGCACCACATGCACCTAACTTGCTGAGTATTGCTGAAGGGAAAGAGAAGACGTGCAGCAGTAGCCCCTGTCATCTACCATCACCTGTAATGTGGGACTACAAATGCCCTGAGATATTCTGGAAGATGGGAGATCAAGAAATCATGATGTGATGGAAAATGAAATCAAGATGTTGGCTGCACGATTTGGTTATGGGCTTATGGTAAATAAGGCCATCGCTATTGAAGGCTGAAGGAATACATCTATATTGGTCAGGCCACTCAGCTATCTGCCTAGCAGATTTGCAGTATTTGTACTTCCTAACTATGCTTGCATTAGTATGCAGTATTTTTAAATCTAGTGTAACACTGGTGGTATGCTCATAATGTATGTATCTATGTAGTTTGAAAAATAGTTTGTATCAGTTTGTGCAATAGTGTGGACGCTCTATATGCATGAT
Copyright © 2023 Grassius.org | Last updated: 2023-06-26